It's not the ECU, and it's not the regulator.
Something on your machine is out of spec, be it a sensor, device, mechanical, or connection, and the ECU sees the problem.
I think Clark's advice to check the quality of the connections, especially at the main fuse (and battery), is a good one. They all must be clean and tight. Also check the grounds, as they have caused problems for some as well. A weak connection in the system can result in low voltage complaints.