When you say both Map sensor, wich are you unpluging?, there is only one MAP, or better said inlet pressure sensor and the other one is the TPS Throttle position sensor. From the PDA error codes 107, 108 it is the MAP sensor wich is malfuntioning. Try to unplug one at the time, first the MAP, and run the engine, throttle it up and see the response, if the problem persist than connect the MAP unplug the TPS, same test. If we still have the problem than we have a more seriuos problem, could be the ECU? The PDA should have a special connector to plug it directly to ECU and run diagnostic on it, this considering the PDA comes with self powered battery cables. Check the current coming from the MAP sensor and see if you get on the +, 5V and on the ground a good (-) , if OK, than bypass the cables from the plug 5V and ground and messure the sensor line, it should give you different readings when you throttle the engine, since it messure the pressure difference the engine does when changing RPM.
keep testing, do you have a friend with the same atv or a 600, 550, same system to swap MAP or TAP or the total throttle unit? Keep the trail and error procedure, but it looks based on the sintoms that there is the MAP false reading, my best guess.