I deleted the post I started yesterday as the information was incorrect.
After much adjusting with different size shims, checking bearings and gear teeth, finding no obvious problems.
Today I have bought some engineers marking blue which I have used to find the contact patch for the teeth,
as you can see from the picture the contact patch is on the toe of the tooth, it should be near the centre.
What are your thoughts ? (it doesn't rotate very smoothly when assembled)